biocore

Aggregate genome coverage

Python implementation and extension of SynDNA ("a Synthetic DNA Spike-in Method for Absolute Quantification of Shotgun Metagenomic Sequencing", Zaramela et al., mSystems 2022

Plugin that converts Conduit metaproteomics results into QIIME 2 artifacts for downstream analyses

Jupyter notebooks to assist with sample processing

Automated taxonomy decoration onto a tree

Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.

Bayesian Inferential Regression for Differential Microbiome Analysis

The Biological Observation Matrix (BIOM) Format Project