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GeometrySpec image-size veto is commented out: a 62MP image OOM-killed two prod api pods

High Priority

Java-basedPull requests that update Java codePull requests that update Java code

Status: Open.

#2021 In virtualcell/vcell;

· jcschaff opened on Aug 22, 2026

Sim health check reports WARNING for "just restarted", pageing on every deploy — give Unknown its own tag and a startup grace window

Error ReportingAll issues related to the relay of errorsAll issues related to the relay of errors

Status: Open.

#2020 In virtualcell/vcell;

· jcschaff opened on Aug 22, 2026

540 Dependabot alerts are 96 packages: Jupyter-as-runtime-dependency is a third of them, and only 6 touch shipped Java

Security

Tech Debt

Status: Open.

#2016 In virtualcell/vcell;

· jcschaff opened on Aug 21, 2026

BIOMD0000001065 flaps between PASS and SOLVER_FAILURE: investigate the fractional-pow-through-zero, and add an INTERMITTENT test status

Testing

validation

Status: Open.

#2005 In virtualcell/vcell;

· jcschaff opened on Aug 20, 2026

BMDB nightly red since 08-18: the baseline accept captured an outlier pass for BIOMD0000001065, which has been failing intermittently since June (not a regression)

validation

Status: Open.

#2000 In virtualcell/vcell;

· jcschaff opened on Aug 20, 2026

Run the Quarkus test suite against Oracle too: 55 dialect branches across 33 files are only ever tested on PostgreSQL

Status: Open.

#1994 In virtualcell/vcell;

· jcschaff opened on Aug 19, 2026

SBMLExporter drops SimulationContextParameter; exporting it needs a rule for names that shadow model parameters

Status: Open.

#1984 In virtualcell/vcell;

· jcschaff opened on Aug 17, 2026

Four BMDB models fail at a second point, revealed once the COPASI annotation cast was fixed

Status: Open.

#1981 In virtualcell/vcell;

· jcschaff opened on Aug 17, 2026

Missing simulation datasets: 5 confirmed losses on published models, all 2004-2005 — find the extent and the cause

Status: Open.

#1980 In virtualcell/vcell;

· jcschaff opened on Aug 17, 2026

JSBML fork upgrade plan: catch up to upstream, and what to send back

Status: Open.

#1978 In virtualcell/vcell;

· jcschaff opened on Aug 17, 2026

User cannot copy / paste overrided parameters (in edit simulation panel) when the override is for a parameter scan

Java-basedPull requests that update Java codePull requests that update Java code

User Interface

Status: Open.

#1930 In virtualcell/vcell;

· CodeByDrescher opened on Aug 13, 2026

regression-gate never gates: the merge queue is bypassed by admin merges

Status: Open.

#1926 In virtualcell/vcell;

· jcschaff opened on Aug 13, 2026